PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015883044.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NF-YB
Protein Properties Length: 176aa    MW: 19651.8 Da    PI: 4.5997
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015883044.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB49.88.4e-168104596
           NF-YB   5 drflPianvsrimkkvlP...ana..kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      ++lP a v r++k  l    ++a   + kda     e +  fi ++++ a+d c++ kr+tingdd+l al ++ f + ++plk+ l+++r+++
  XP_015883044.1   8 AEELPKAIVRRVVKDKLSqcsSDAdiNVHKDALLAFSESARIFIHYLSATANDICKESKRQTINGDDVLKALEEIEFPELLKPLKASLAEFRKMN 102
                     5689**********99862223441256799999***********************************************************98 PP

           NF-YB  95 ge 96 
                     + 
  XP_015883044.1 103 AG 104
                     75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.0E-295109IPR009072Histone-fold
PfamPF008084.9E-111079IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.31E-2211118IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.0E-29142164IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MEKVVSEAEE LPKAIVRRVV KDKLSQCSSD ADINVHKDAL LAFSESARIF IHYLSATAND  60
ICKESKRQTI NGDDVLKALE EIEFPELLKP LKASLAEFRK MNAGKKAAAS KGKEVKGKEV  120
KGKEVKGKEV KKKRKLEEES SHETEASDSK QDEKDENEEE AEDEDNEDDE EGSGDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135KKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015883044.11e-120PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLW9QJ555e-68W9QJ55_9R
STRINGGLYMA11G18960.12e-61(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.13e-43nuclear factor Y, subunit B11